📚 Lecture 5 · IP Litigation & Disputes in Biotech
What happens when someone contests the patent you spent years building.
103 · L5 IP Litigation & Disputes in Biotech
Overview — the master logic of biotech IP disputes
This lecture answers a different question from the previous four. L1–L4 asked how do you obtain and use IP. L5 asks what happens when someone contests it. The through-line is that a granted patent is not a right, it is a claim — and every granted claim is assumed false until it survives challenge. In biopharma that assumption bites harder than in most industries, because the same product can simultaneously be attacked on eligibility, on written description, on infringement and on regulatory ground. The lecture runs in three parts: Part 1, the forums — who hears what, and how the US and Chinese systems are structurally different; Part 2, the six recurring types of biotech dispute with their case law; Part 3, the emerging trends — AI as inventor, the complexity of modern biologics, and platform patent battles such as CRISPR.
Key Terms 關鍵術語
| English | 中文邏輯 |
|---|---|
| Litigation (infringement) | 告對方侵權,救的是「這件產品有沒有落入我的 claim」 |
| Invalidation (validity) | 攻擊專利本身,問「這件專利當初應不應該被授予」 |
| PTAB | 美國專利審訴委員會,處理 IPR/PGR 等行政無效程序;不是法院 |
| CNIPA | 中國國家知識產權局,專利審查+複審+無效宣告;不是法院 |
| IP Court (知識產權法院) | 北京、上海、廣州三大知識產權法院,專利一審 |
| SPC (最高人民法院) | 專利二審與終審;2018 年設立知識產權法庭,統一專利終審 |
| Unified model | 美國制:有效性與侵權在同一程序、同一法院一併審理 |
| Bifurcated model | 中國制:法院只管侵權,有效性交給 CNIPA 走行政程序 |
| Discovery | 美國的證據開示程序;中國法院無 discovery,這是訴訟策略差異的根源 |
| Markedly different characteristics | Myriad 測試:與天然物在結構、功能或性質上有顯著差異,才脫離「自然產物」 |
| Patent eligibility (§101) | 專利適格性:抽象概念、自然法則、自然現象本身不可專利 |
| Claim breadth 與 written description | claim 寫得越寬,說明書支撐越薄;兩者是拉緊的關係 |
| Hatch-Waxman / patent linkage | 美國橙皮書制度:仿製藥須逐件聲明,藥企 45 日內可提起訴訟 |
| Orange Book | FDA 批准藥物所對應專利的名單;仿製藥的聲明義務範圍 |
| Patent dance | 生物類似藥上市前的自願性專利交換與協商流程,非強制(Sandoz v. Amgen) |
| Skinny label | 薄標籤:只保留未經專利保護的適應症以避開侵權,但宣傳不能暗示 |
| Induced infringement | 誘導侵權:薄標籤若在宣傳上推薦被專利適應症,仍可能敗訴(Teva、Amarin) |
| DABUS | AI 自主發明案;多國已裁明 AI 不能為 inventor |
| Article 2.2(中國專利法第2條第2款) | 中國對軟體專利的判準:須為「技術方案」,即使未指定應用領域仍可能准 |
| Interference | 美國兩造主張「同一專利發明」的對決程序;CRISPR 案的戰場 |
| Reasonable expectation of success | 顯而易見性判準:領域內技術人員是否會有「合理成功的預期」 |
Part 1 — Litigation framework: the two forums
The US court system 兩制法院架構
Understanding the US system matters because the deck's case law is US case law. The structure is a two-branch design: an administrative branch and a judicial branch.
| Branch | Bodies | Function |
|---|---|---|
| Administrative | USPTO · PTAB | 審查、複審、無效宣告(invalidation through PTAB) |
| Judicial | US District Courts → Federal Circuit → US Supreme Court | District Court 一審專利訴訟;Federal Circuit 對全國專利上訴案有管轄權;Supreme Court 就重大法律問題作最終仲裁 |
| Parallel state courts | State Supreme Court · Intermediate Appellate Courts · State Trial Courts | 州層級體系存在,但聯邦專利案不進州法院 |
One point that is easy to miss and easy to be examined on: the Federal Circuit is not a typical appeals court. It is a court of appeals with nationwide jurisdiction over patent appeals, and its decisions bind every district court. That is why a Federal Circuit ruling such as Thaler v. Vidal on AI inventorship effectively sets the national rule overnight.
The Chinese IP court system 中國知識產權法院體系
China rebuilt its patent litigation architecture from scratch in three waves, and the dates matter because they explain the structure:
- 2014 — Beijing, Shanghai and Guangzhou set up IP Courts as first-instance venues for patent cases, sitting alongside the provincial High Courts.
- 2017–2018 — eighteen local IP Tribunals created in Chengdu, Wuhan, Hefei, Fuzhou, Xi'an, Nanchang, Nanjing, Suzhou, Zhengzhou, Tianjin, Changsha, Changchun, Hangzhou, Ningbo, Jinan, Qingdao, Shenzhen and Lanzhou, plus the Beijing Internet Court.
- 2018 — the Supreme People's Court established IP Tribunals to handle all second-instance and final patent cases, creating a unified national appellate body.
- CNIPA sits outside the court hierarchy entirely — it examines, reexamines and invalidates patents administratively.
Litigation vs. Invalidation — the core distinction
| Aspect | Litigation (Infringement) | Invalidation (Validity) |
|---|---|---|
| Forum (US) | Federal District Court | PTAB (IPR / PGR) 或在訴訟中一併提出 |
| Forum (China) | IP Court(如北京、上海) | CNIPA |
| Initiated by | 專利權人,對侵權人提起 | 第三方,或被控侵權人反訴 |
| Focus | 產品或製程是否落入專利範圍之內 | 這件專利是否本應被授予 |
| Outcome | 賠償、禁令 | 維持/修改/撤銷 |
Note the strategic consequence: because the defendant can raise invalidity as a counter-suit, a patentee suing for infringement is automatically exposing the validity of the very patent it relies on. Most infringement settlements are therefore priced off the combined risk of both questions, not just one.
Unified vs. bifurcated — why the forum split matters strategically
| The U.S. | China | |
|---|---|---|
| Administrative | USPTO:審查、複審,經 PTAB 進行無效宣告 | CNIPA:審查、複審、無效宣告 |
| Litigation | District Court 一審;Federal Circuit 對全國專利上訴有管轄權,並決定 USPTO 上訴;最高法院作最終仲裁 | Intermediate IP Court 一審;Beijing IP Court 決定 CNIPA 上訴;最高法 IP Court 為專利統一終審 |
| Model | Unified:有效性與侵權在同一程序中裁決 | Bifurcated:侵權由法院處理,有效性由 CNIPA 另行處理 |
| Discovery | 有 discovery | 無 discovery |
Part 2 — The six types of biotech dispute
The deck organises the whole field into six recurring fights. Each is worth being able to name, define and give a case for.
| # | Dispute type | The question it asks |
|---|---|---|
| 1 | Patent eligibility of nature | 「你能不能專利一個基因?」— 專利適格性(§101 / 自然法則) |
| 2 | Claim breadth & written description | 「幾個例子能不能支撐整類抗體的專利?」— 說明書支撐 |
| 3 | Diagnostic correlations | 「醫學發現怎麼保護?」— 診斷方法的可專利性 |
| 4 | Hatch-Waxman / patent linkage | 學名藥 vs. 原研藥的上市前對決(generic vs. innovator) |
| 5 | Biosimilars litigation | 「專利舞蹈」(the patent dance) |
| 6 | Skinny label litigation | 仿製藥廣告怎麼寫才不侵權 |
Type 1 — Patent eligibility of nature
Natural products, natural phenomena and abstract ideas sit outside patentable subject matter. The practical question for a biopharma company is always the same: does the claimed thing sit on top of nature, or has it been made to differ from nature enough to escape the exclusion?
| Claim | US | China / Europe |
|---|---|---|
| Newly discovered bacteria and its inherent properties | US is OK | CN and EP not OK |
| Method of treating cancer by administering compound A | US is OK | CN and EP not OK |
| A plant whose leaves can cure a disease | Natural phenomenon — 不可專利 | 同樣排除 |
| Man-made (“synthesized”) clone | 人工製品,與天然對應物不同 | — |
| Correlation between a biomarker and disease | 自然關聯 本身不可專利 | 同樣風險 |
Type 2 — Claim breadth, written description and enablement
The scope triangle
Claim scope is a three-way trade-off, and drafting is choosing where to sit on it:
| Drafting choice | Consequence |
|---|---|
| Too broad | 更容易覆蓋 prior art → 容易被無效;說明書支撐薄弱 |
| Too narrow | 對手容易 design around;覆蓋不到那麼多潛在侵權人 |
| Definite | 清楚界定發明;有說明書支撐;written description 成立 |
- The claims did not describe the antibody's structure — only what it binds to. Functional claims are not enough.
- Only 26 examples were disclosed, when millions and millions of possible sequences existed — a finding of undue experimentation.
- The standard moved permanently. The takeaway slide is blunt: the standard for enablement and written description is much higher now, and the old “newly characterised antigen” route is closed.
Type 3 — Judicial exceptions: abstract ideas
The second statutory exclusion, alongside nature, is the abstract idea. The enumerated categories are:
| Abstract idea | Definition |
|---|---|
| Mathematical algorithms, formula | 數學演算法與公式 |
| Methods of organizing human activity or practices | 組織人類活動或商業行為的方法 |
| Abstract steps merely performed by a computer | 僅由電腦執行的抽象步驟 |
| Fundamental economic concepts | 基本經濟概念 |
| An idea with no particular concrete or tangible form | 沒有具體或可觸形式的構想 |
Type 4 — Patent linkage / Hatch-Waxman litigation
How the mechanism works
The system is best understood as a pre-launch gauntlet. The regulator publishes an “Orange Book” of patents covering the approved reference drug; the generic applicant must certify its position against every one of them before it can get marketing approval; if the generic says a listed patent is invalid or not infringed, the patent owner has a short window to sue; and the litigation outcome — not the regulator — decides whether the generic enters the market.
The four generic certifications
| Category | Certifying declaration by the applicant | Approval timeline |
|---|---|---|
| I | 沒有任何與原研藥相關的專利列於名單 | 立即 |
| II | 名單上的專利已過期或已被無效 | 立即 |
| III | 有列名專利,但該藥不落入專利範圍 | 立即,但須等到專利到期才可上市 |
| IV | 申請人認為列名專利無效或未被侵權 | 創新公司須在聲明公告後 45 日內向人民法院提起訴訟或向 CNIPA 提出無效宣告;小分子有 9 個月停留期 |
What happens after the litigation
| Outcome | Approval timeline |
|---|---|
| Generic does NOT fall within the patent | 正常行政審查程序(FDA review 可在專利到期前開始) |
| Patent is invalidated | 正常行政審查程序 |
| Parties settle | 同上 |
| Generic DOES fall within the scope of the patent | FDA 審查不會開始,直到專利到期日之前才啟動 |
| No decision issued within the stay period | 同「落入範圍」處理:審查押後至專利到期前 |
The China slide adds the incentive that makes the system work: the first generic to successfully challenge gets 6 months' data exclusivity and 12 months' market exclusivity. That is the reward for being first, and it is why the category analysis is a race rather than a checklist.
China's first patent linkage decisions
- Roche v. Chugai (CN1938034B) — a composition of eldecalcitol with an antioxidant, where the antioxidant is added to prevent degradation to specified metabolites and the level stays at 1% or less after 12 months. The IP Court ruled against Roche.
- Purdue (three asserted patents) — CN105267170B and CN102657630B both defined oxycodone HCl formulations by polyethylene-oxide molecular weight and rheology; CN101812065B claimed an oxycodone extended-release matrix of ≤25 ppm 14-hydroxycodeine ketone. The IP Court ruled against Purdue.
The technical lesson from the Purdue set is worth extracting: patenting on a measurement window (molecular weight, rheology, ppm threshold) produces claims that are numerically precise yet jurisdictionally fragile, because the measuring method is exactly what the accused party can contest.
| Patent | Subject matter | BJ IP Court | SPC (appeal) |
|---|---|---|---|
| ZL20080016902.7 | Immediate-release tablets/capsules of dapagliflozin propylene glycol hydrate + excipients | Infringes | UPHELD |
| ZL201210201489.X | Same hydrate, daily dose 0.1–750 mg/day, single or divided dosing | Infringes | UPHELD |
| ZL200780024135.X | Crystalline structure characterised by powder X-ray diffraction pattern of Figure 1 | Infringes | OVERTURNED — 晶型專利不符合在 CDE 平台登記的資格 |
Type 5 — Biosimilars and the patent dance
Biologics follow a different route from small molecules because they are approved through a BLA rather than an NDA, and because the reference product sponsor is called the RPS rather than an NDA holder.
- 180-day notice. If a biosimilar is to enter the market, the manufacturer must notify the RPS no later than 180 days before the commercial marketing date, including its process patents (composition of matter, formulations, medical use, extraction methods for TCMs) where an NDA/BLA is on file.
- The dance is optional. Established in Sandoz v. Amgen, the patent dance is a voluntary process designed to streamline litigation.
- Biosimilar applicant initiates — provides its abbreviated BLA (aBLA) and details of its manufacturing process to the RPS.
- RPS responds — provides a list of patents it believes could be infringed, plus an initial licensing offer.
- Biosimilar applicant responds — explains why its product does not infringe, or why the patents are invalid or unenforceable.
- Negotiation — a series of information exchanges over several months, producing a final list of patents that may be litigated immediately (Phase i) versus those that could be litigated later, closer to launch (Phase II).
Type 6 — Skinny label litigation
A skinny label is a regulatory carve-out: the generic or biosimilar application removes the patented indication while keeping the unpatented ones, so the label no longer reads on the protected use.
| Original reference biologic (brand label) | Generic / biosimilar application | Approved skinny label |
|---|---|---|
| Indication A – hypertension Indication B – heart failure (patented) Indication C – kidney (unpatented) | 移除 B → 可取得市場准入 | 保留 A 與 C |
The purpose is market entry for the unpatented uses. The relevance is to biosimilars with multiple indications. The risk is induced infringement if the marketing implies the patented use.
Part 3 — Evolving trends
Trend 1 — AI and drug discovery
Four questions arise: can AI be an inventor, who owns an AI-made invention, and will patent offices accept in silico data in place of real experimental data.
| Country / Region | Status | Summary |
|---|---|---|
| United States | AI Not Inventor | Thaler v. Vidal (2022):只有自然人可為 inventor;最高法院拒絕調卷,立場維持不變 |
| United Kingdom | AI Not Inventor | 最高法院 2023:DABUS 不可被列為 inventor,因 1977 年專利法要求自然人 |
| Europe (EPO) | AI Not Inventor | 依 EPC,只有具備「法律人格」(人)者為 inventor |
| Australia | AI Not Inventor | Full Federal Court 2022 推翻一審判決,裁定 inventor 須為自然人;高等法院拒絕上訴 |
| South Africa | Formally Accepted | 2021 年實際核發了以 DABUS 為 inventor 的專利,但該系統不實質審查 |
How do you patent an AI invention?
The Chinese framing on the slide is the most useful one for this course. An AI algorithm is not patent-eligible on its own. It becomes so when you add a technical solution:
| Level | What it means |
|---|---|
| “Software” level | 演算法與模型本身:neural networks、deep learning、genetic algorithms — NO,不適格 |
| “Hardware” level | 涉及硬件、以及為支撐 AI 功能而做的算力與資料資源分配 |
| Practical application into products | 把演算法接入「自然世界」的應用:translation、self-driving、medical device 等;claim 必須顯示演算法與該應用領域技術特徵之間的直接技術關聯 |
The worked example — Google's Transformer
The slide reproduces the opening of the claim for a sequence-transduction neural network using self-attention (encoder with self-attention sub-layers, decoder, encode-and-generate), and then states the outcome: ALLOWED in the US, REJECTED in China on appeal (rejection decision 201880007309X). The same claim, two offices, opposite results — the cleanest illustration that AI patentability is jurisdiction-specific.
- Improving the computer itself. Show how the algorithm directly improves the computer's functioning; ideally at the hardware level, showing hardware resources being specifically scheduled, reduced or improved.
- Improvements for specific applications. Draft the practical application into the claim as filed (draft many different claims); provide examples and detailed description of how the algorithm interacts with technical features or specific data to produce specific technical effects; create clear steps tied to actual tangible inputs (natural language text, data); the more specific, and the more different examples, the better; explain the technical effect in the specification.
- User experience. Where relevant, show how the algorithm interacts with technical features to improve the user experience.
- Inventive step. Show how the algorithm causes the improved technical effect.
Other impacts of AI on patents
- Standard for inventiveness. Who is the “skilled person in the art” now? Is the inventiveness standard higher, since we are all “smarter” with AI? The obvious extension of the obviousness question.
- Is AI legitimate prior art? Some are already trying to “pollute” the prior art to prevent others protecting new inventions.
- Data protection. The massive datasets used for AI training are very valuable, and how best to protect them is an open question — patents, trade secrets, or copyright? Artists are already suing AI companies; if massive patient data is used, will patients do the same?
Trend 2 — biologics are more complex, so IP protection must be too
Before, the patentable unit was a small molecule or a biological sequence. Now the unit is a combination of components, and the claim has to describe each of them:
| Example biologic therapy | Example distinct features |
|---|---|
| Antibody–Drug Conjugate | 抗體序列(VH/VL regions、Fc)、抗原標的、linker chemistry、payload、conjugation ratio、indication |
| CRISPR–Cas9 | Cas enzyme、guide RNA、delivery system、editing method、repair template、delivery system |
| Base / Prime Editing | Nuclease variant、fusion proteins、guide RNA design、editing method、delivery system (LNP) |
| CAR-T Therapy | CAR construct(編碼抗體結合區 + hinge + transmembrane + signaling domains 的 DNA)、T cell、vector、manufacturing |
| mRNA Vaccine | Antigen sequence、RNA design、delivery system (LNP)、dosing regimen |
| Multi-specific antibody | 抗體序列(VH/VL、Fc)、第一抗原標的、第一 linker chemistry、第一 payload、第二抗原標的、第二 linker chemistry、第二 payload 等 |
The generative list of what must now be claimed in parallel: ADCs, gene therapy and gene-editing tools (CRISPR Cas9), cell therapies (CAR-T), mRNA and siRNA, and drug-delivery platforms (LNP).
Trend 3 — global protection strategy
- Coordinate patent protection strategy around the world rather than jurisdiction by jurisdiction.
- Regulatory rules differ, and they favour whoever enters earlier — China gives PTE and possibly full data exclusivity to those who first file in China.
- Genetic information privacy laws differ in each jurisdiction.
Trend 4 — platform patent battles: the CRISPR story
| Date | Event |
|---|---|
| Jun 2012 → 25 May 2012 | UC Berkeley 的 flagship CRISPR 論文 “Jinek” 發表(顯示 CRISPR-Cas9 在原核細胞中有效) |
| 12 Dec 2012 | Broad 臨時專利申請(US provisional) |
| 16 Mar 2013 | AIA(America Invents Act)生效 — 專利先申請制實施 |
| Apr 2014 | UC Berkeley 獲授權 |
| 13 Apr 2015 | Grant — Interference in fact(對決程序)成立 |
| 10 Sept 2018 | Broad 在 PTAB 勝訴 |
| 23 Apr 2019 | Broad 獲授權 |
| 2020 | Doudna & Charpentier 獲諾貝爾獎 |
| 28 Feb 2022 | Interference proceeding |
| 27 May 2025 | Vacated and Remanded(撤銷并发回重審) |
中文邏輯:專利是「主張」不是「權利」。生物科技糾紛歸納為六類——自然物的專利適格性、claim 廣度與說明書支撐、診斷關聯、專利連結、生物類似藥的專利舞蹈、薄標籤——每一類的勝負都取決於架構:中國把有效性(CNIPA)與侵權(知識產權法院)分軌,美國則合為一軌並由 Federal Circuit 全國統轄上訴,因此同一件專利在兩地會有不同解讀。